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2010
Li X, Navarro-Sigüenza AG, Peterson ATownsend.  2010.  Joint effects of marine intrusion and climate change on the Mexican avifauna. Annals of the Association of American Geographers.
Bonaccorso E, Peterson ATownsend, Navarro-Sigüenza AG, Fleischer RC.  2010.  Molecular systematics and evolution of the Cyanocorax jays. Molecular Phylogenetics and Evolution.
2009
Peterson ATownsend, Navarro-Sigüenza AG.  2009.  Making biodiversity discovery more efficient: An exploratory test using Mexican birds. Zootaxa. 2246:58-66.
2008
Ramirez-Bastida P, Navarro-Sigüenza AG, Peterson ATownsend.  2008.  Aquatic bird distributions in Mexico: Designing conservation approaches quantitatively. Biodiversity and Conservation. 17:2525-2558.
Navarro-Sigüenza AG, Peterson ATownsend, Puig-Samper MA, Zamudio G.  2008.  The ornithology of the Real Expedición Botánica a Nueva España (1787-1803): An analysis of the manuscripts of José Mariano Mociño. Condor.
Honey-Escandón M, Hernández-Baños BE, Navarro-Sigüenza AG, Benítez-Díaz H, Peterson ATownsend.  2008.  Phylogeographic patterns of differentiation in the Acorn Woodpecker. Wilson Journal of Ornithology. 120:478-493.
Cortés-Rodríguez N, Hernández-Baños BE, Navarro-Sigüenza AG, Peterson ATownsend, García-Moreno J.  2008.  Phylogeography and population genetics of the Amethyst-throated Hummingbird (Lampornis amethystinus). Molecular Phylogenetics and Evolution. 48:1-11.
Navarro-Sigüenza AG, Peterson ATownsend, Nyári ÁS, García-Deras GM, García-Moreno J.  2008.  Phylogeography of the Buarremon brush-finch complex (Aves, Emberizidae) in Mesoamerica. Molecular Phylogenetics and Evolution. 47:21-35.
Bonaccorso E, Navarro-Sigüenza AG, Sánchez-González LA, Peterson ATownsend, García-Moreno J.  2008.  Phylogeography of the Chlorospingus ophthalmicus complex of Mexico and Central America. Journal of Avian Biology. 39:311-321.
Navarro-Sigüenza AG, Ortiz-Pulido R, Peterson ATownsend.  2008.  Un panorama breve de la historia de la ornitología Mexicana. Ornitologia Neotropical. 19 (supplement):367-379.
2007
Ortiz-Pulido R, Navarro-Sigüenza AG, Gómez de Silva Garza H, Peterson ATownsend, Rojas-Soto OR.  2007.  Avifaunas Estatales de México; http://www.huitzil.net/aeindice.htm; book published in serial form.
Navarro-Sigüenza AG, Lira-Noriega A, Peterson ATownsend, Oliveras de Ita A, Gordillo-Martínez A.  2007.  Diversidad, endemismo y conservación de las aves. Biodiversidad de la Faja Volcánica Transmexicana.
Puebla-Olivares F, Bonaccorso E, Espinosa de los Monteros A, Omland KE, Llorente-Bousquets JE, Peterson ATownsend, Navarro-Sigüenza AG.  2007.  Speciation in the Emerald Toucanet (Aulacorhynchus prasinus) complex. Auk. 125:39-50.
Sánchez-González LA, Navarro-Sigüenza AG, Peterson ATownsend.  2007.  Taxonomy of Chlorospingus ophthalmicus in Mexico and northern Central America. Bulletin of the British Ornithologists' Club. 127:34-49.
2006
Peterson ATownsend, Navarro-Sigüenza AG.  2006.  Consistency of taxonomic treatments: A response to Remsen (2005). Auk. 123:885-887.
2005
Komar O, O'Shea BJ, Peterson ATownsend, Navarro-Sigüenza AG.  2005.  Evidence for latitudinal sexual selection among migratory birds wintering in Mexico. Auk. 122:938-948.
Peterson ATownsend, Navarro-Sigüenza AG.  2005.  Hundred-year changes in the avifauna of the Valley of Mexico, Distrito Federal, Mexico. Huitzil. 7:4-14.
Peterson ATownsend, Canseco-Márquez L, Contreras-Jiménez JL, Escalona-Segura G, Flores-Villela O, García-López J, Hernández-Baños BE, Jiménez-Ruiz CA, León-Paniagua L, Mendoza-Amaro S et al..  2005.  A preliminary biological survey of Cerro Piedra Larga, Oaxaca, Mexico: Birds, mammals, reptiles and amphibians, and plants. Anales del Instituto de Biologia, U.N.A.M.. 75:439-466.
2004
Navarro-Sigüenza AG, Peterson ATownsend.  2004.  An alternative species taxonomy of Mexican birds. Biota Neotropica. 4: http://www.biotaneotropica.org.br/v4n2/pt/abstract?article+BN02304022004
García-Moreno J, Navarro-Sigüenza AG, Peterson ATownsend, Sánchez-González LA.  2004.  Genetic variation coincides with geographic structure in the Common Bush-tanager (Chlorospingus ophthalmicus) complex from Mexico. Molecular Phylogenetics and Evolution. 33:186-196.
Peterson ATownsend, Rice NH, Navarro-Sigüenza AG.  2004.  Geographic variation in the Rosy Thrush-tanager (Rhodinocichla rosea) complex of Mesoamerica (Aves: Passeriformes). Biota Neotropica. 4: http://www.biotaneotropica.org.br/v4n2/pt/abstract?article+BN02304022004
Nakazawa Y, Peterson ATownsend, Martínez-Meyer E, Navarro-Sigüenza AG.  2004.  Seasonal niches of Nearctic-Neotropical migratory birds: Implications for the evolution of migration. Auk. 121:610-618.
Peterson ATownsend, Komar N, Komar O, Navarro-Sigüenza AG, Robbins MB, Martínez-Meyer E.  2004.  West Nile Virus in the New World: Potential impacts on bird species. Bird Conservation International. 14:215-232.
2003
Navarro-Sigüenza AG, Peterson ATownsend, Nakazawa Y, Liebig-Fossas I.  2003.  Colecciones biológicas, modelaje de nichos ecológicos y los estudios de la biodiversidad.. Una Perspectiva Latinoamericana de la Biogeografía. :115-122.
Peterson ATownsend, Navarro-Sigüenza AG.  2003.  Computerizing bird collections and sharing collection data openly: Why bother? Bonner Zoologische Beiträge. 51:205-212.